SNP Profiles matching UF 12

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 Key

 1234567891011121314
_Input profile
GGATACGTCTCCGGGGCCAAGGAGACCT
1._EET_399_[ECU]
GGATACGTCTCCGGGGCCAAGGAGACCT
2._EET_399_[ECU]
GGATACGTCTCCGGGGCCAAGGAGACCT
3._GC-04-047-3-11
GGATACGTCTCCGGGGCCAAGGAGACCT
4._GC-04-047-3-11
GGATACGTCTCCGGGGCCAAGGAGACCT
5._GC-04-047-3-11
GGATACGTCTCCGGGGCCAAGGAGACCT
6._EET_399_[ECU]
GGATACGT_CCGGGGCCAAGGAGACCT
7._EET_399_[ECU]
GGATACGT_CCGGGGCCAAGGAGACCT
8._EET_399_[ECU]
GGATACGTCTCCGGGGCCAAGGAGACCT
9._EET_399_[ECU]
GGATACGTCTCCGGGGCCAAGGAG_CT
10._GC-04-047-3-11
GGATACGTCTCCGGGGCCAAGGAG_CT
11._GC-04-047-3-11
GGATACGTCTCCGGGGCCAAGGAGACCT
12._GC-04-047-3-11
GGATACGT_CCGGGGCCAAGGAGACCT
13._GC-04-047-3-11
GGATACGT_CCGGGGCCAAGGAGACCT
14._RUQ_745
GGATACGTCTCCGGGGCCAAGGAGACCT
15._RUQ_745
__ACGTCTCCGGGGCCAA_AGACCT
16._EET_400_[ECU]
GGATACGTCTCC_AGCCAAGGAGACCT
17._EET_400_[ECU]
GGATACGTCTCCCCAGCTAAGGAGACCT
18._EET_400_[ECU]
GGATACGTCTCCCCAGCTAAGGAGACCT
19._EET_400_[ECU]
GGATACGTCTCCCCAGCTAAGGAGACCT
20._GC-01-066-4-02
GGATACGTCTCCCCAGCTAAGGAGACCT
21._GC-01-066-4-02
GGATACGTCTCCCCAGCTAAGGAGACCT
22._GC-01-066-4-02
GGATACGTCTCCCCAGCTAAGGAGACCT
23._POUND_10_/B
GGATACGTCTCCCCAGCTAAGGAGACCT
24._POUND_10_/B
GGATACGTCTCCCCAGCTAAGGAGACCT
25._POUND_10_/B
GGATACGTCTCCCCAGCTAAGGAGACCT
26._POUND_10_/B
GGATACGTCTCCCCAGCTAAGGAGACCT
27._POUND_10_/B
GGATACGTCTCCCCAGCTAAGGAGACCT
28._POUND_10_/B
GGATACGTCTCCCCAGCTAAGGAGACCT
29._POUND_10_/B
GGATACGTCTCCCCAGCTAAGGAGACCT
30._POUND_10_/B
GGATACGTCTCCCCAGCTAAGGAGACCT
31._GC-01-115-6-12
GGATACGTCTCCCCAGCTAAGGAGACCT
32._GC-01-115-6-12
GGATACGTCTCCCCAGCTAAGGAGACCT
33._GC-08-162-4-05
GGATACGTCTCCCCAGCTAAGGAGACCT
34._GC-08-162-4-05
GGATACGTCTCCCCAGCTAAGGAGACCT
35._GC-08-162-4-05
GGATACGTCTCCCCAGCTAAGGAGACCT
36._GC-08-162-4-05
GGATACGTCTCCCCAGCTAAGGAGACCT
37._GC-08-162-4-05
GGATACGTCTCCCCAGCTAAGGAGACCT
38._GC-08-162-4-05
GGATACGTCTCCCCAGCTAAGGAGACCT
39._POUND_10_/B
GGATACGTCTCCCCAGCT_GGAGACCT
40._GC-08-162-4-05
GGATACGTCTCCCCAGCT_GGAGACCT
41._EET_400_[ECU]
GGATACGTCTCCCCAGCTAAGGAGACCT
42._RUQ_760
GGATACGTCTCCCCAGCTAAGGAGACCT
 1516171819202122232425262728
_Input profile
GGGGACCTAAGTCGCTCTCGAATTAACC
1._EET_399_[ECU]
GGGGACCTAAGTCGCTCTCGAATTAACC
2._EET_399_[ECU]
GGGGACCTAAGTCGCTCTCGAATTAACC
3._GC-04-047-3-11
GGGGACCTAAGTCGCTCTCGAATTAACC
4._GC-04-047-3-11
GGGGACCTAAGTCGCTCTCGAATTAACC
5._GC-04-047-3-11
GGGGACCTAAGTCGCTCTCGAATTAACC
6._EET_399_[ECU]
GGGGACCTAAGTCGCTCTCGAATTAACC
7._EET_399_[ECU]
GGGGACCTAAGTCGCTCTCGAATTAACC
8._EET_399_[ECU]
_GGACCTAAGTCGCTCTCGAATTAACC
9._EET_399_[ECU]
GGGGACCTAAGTCGCTCTCGAATTAACC
10._GC-04-047-3-11
GGGGACCTAAGTCGCTCTCGAATTAACC
11._GC-04-047-3-11
_GGACCTAAGTCGCTCTCGAATTAACC
12._GC-04-047-3-11
GGGGACCTAAGTCGCTCTCGAATTAACC
13._GC-04-047-3-11
GGGGACCTAAGTCGCTCTCGAATTAACC
14._RUQ_745
GGGGACCTAAGTCGCTCTCGAATTAACC
15._RUQ_745
GGGGACCT_GTCGTT____AACC
16._EET_400_[ECU]
GGGGACCTAAGGCGCTCTCGAATTAACC
17._EET_400_[ECU]
GGGGACCTAAGGCGCTCTCGAATTAACC
18._EET_400_[ECU]
GGGGACCTAAGGCGCTCTCGAATTAACC
19._EET_400_[ECU]
GGGGACCTAAGGCGCTCTCGAATTAACC
20._GC-01-066-4-02
GGGGACCTAAGGCGCTCTCGAATTAACC
21._GC-01-066-4-02
GGGGACCTAAGGCGCTCTCGAATTAACC
22._GC-01-066-4-02
GGGGACCTAAGGCGCTCTCGAATTAACC
23._POUND_10_/B
GGGGACCTAAGGCGCTCTCGAATTAACC
24._POUND_10_/B
GGGGACCTAAGGCGCTCTCGAATTAACC
25._POUND_10_/B
GGGGACCTAAGGCGCTCTCGAATTAACC
26._POUND_10_/B
GGGGACCTAAGGCGCTCTCGAATTAACC
27._POUND_10_/B
GGGGACCTAAGGCGCTCTCGAATTAACC
28._POUND_10_/B
GGGGACCTAAGGCGCTCTCGAATTAACC
29._POUND_10_/B
GGGGACCTAAGGCGCTCTCGAATTAACC
30._POUND_10_/B
GGGGACCTAAGGCGCTCTCGAATTAACC
31._GC-01-115-6-12
GGGGACCTAAGGCGCTCTCGAATTAACC
32._GC-01-115-6-12
GGGGACCTAAGGCGCTCTCGAATTAACC
33._GC-08-162-4-05
GGGGACCTAAGGCGCTCTCGAATTAACC
34._GC-08-162-4-05
GGGGACCTAAGGCGCTCTCGAATTAACC
35._GC-08-162-4-05
GGGGACCTAAGGCGCTCTCGAATTAACC
36._GC-08-162-4-05
GGGGACCTAAGGCGCTCTCGAATTAACC
37._GC-08-162-4-05
GGGGACCTAAGGCGCTCTCGAATTAACC
38._GC-08-162-4-05
GGGGACCTAAGGCGCTCTCGAATTAACC
39._POUND_10_/B
GGGGACCTAAGGCGCTCTCGAATTAACC
40._GC-08-162-4-05
GGGGACCTAAGGCGCTCTCGAATTAACC
41._EET_400_[ECU]
GGGGACCTAAGGCGCTCTCGAATTAACC
42._RUQ_760
GGGGACCTAAGGCGCTCTCGAATTAGCC
 293031323334353637383940  
_Input profile
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
1._EET_399_[ECU]
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
2._EET_399_[ECU]
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
3._GC-04-047-3-11
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
4._GC-04-047-3-11
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
5._GC-04-047-3-11
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
6._EET_399_[ECU]
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
7._EET_399_[ECU]
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
8._EET_399_[ECU]
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
9._EET_399_[ECU]
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
10._GC-04-047-3-11
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
11._GC-04-047-3-11
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
12._GC-04-047-3-11
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
13._GC-04-047-3-11
GGAACCCTGGTTAACTTTCCAGCCX_XX_X
14._RUQ_745
GGAACCCTGGTTACCTTTCCAGCCX_XX_X
15._RUQ_745
____GG___TTCCAG_X_XX_X
16._EET_400_[ECU]
GG__CTGTTTAC_TTCCAG_X_XX_X
17._EET_400_[ECU]
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
18._EET_400_[ECU]
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
19._EET_400_[ECU]
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
20._GC-01-066-4-02
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
21._GC-01-066-4-02
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
22._GC-01-066-4-02
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
23._POUND_10_/B
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
24._POUND_10_/B
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
25._POUND_10_/B
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
26._POUND_10_/B
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
27._POUND_10_/B
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
28._POUND_10_/B
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
29._POUND_10_/B
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
30._POUND_10_/B
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
31._GC-01-115-6-12
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
32._GC-01-115-6-12
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
33._GC-08-162-4-05
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
34._GC-08-162-4-05
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
35._GC-08-162-4-05
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
36._GC-08-162-4-05
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
37._GC-08-162-4-05
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
38._GC-08-162-4-05
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
39._POUND_10_/B
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
40._GC-08-162-4-05
GGAACCCTGTTTAACTTTCCAGCCX_XX_X
41._EET_400_[ECU]
GGAACCCTGTTTACCTTTCCAGCCX_XX_X
42._RUQ_760
GGAACCCTGTTTACCTTTCCAGCCX_XX_X

Input profile: UF_12

 
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Mars Center for Cocoa Science, Brazil
Location: 5221 5
 Dapeng Zhang, 2016

1._EET_399_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

2._EET_399_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

3._EET_399_[ECU] GC-04-047-3-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._EET_399_[ECU] GC-04-047-3-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

5._EET_399_[ECU] GC-04-047-3-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

6._EET_399_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

7._EET_399_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

8._EET_399_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

9._EET_399_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

10._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

12._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

13._EET_399_[ECU] GC-04-047-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

14._EET_399_[ECU] RUQ_745

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_399_[ECU] RUQ_745

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._EET_400_[ECU]

94.3 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._EET_400_[ECU]

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

19._EET_400_[ECU]

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

20._EET_400_[ECU] GC-01-066-4-02

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

21._EET_400_[ECU] GC-01-066-4-02

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._EET_400_[ECU] GC-01-066-4-02

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

23._POUND_10_/B

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

24._POUND_10_/B

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

25._POUND_10_/B

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

26._POUND_10_/B

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

27._POUND_10_/B

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

28._POUND_10_/B

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

29._POUND_10_/B

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

30._POUND_10_/B

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

31._POUND_10_/B GC-01-115-6-12

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

32._POUND_10_/B GC-01-115-6-12

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

33._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

34._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

35._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

36._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

37._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

38._POUND_10_/B GC-08-162-4-05

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

39._POUND_10_/B

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

40._POUND_10_/B GC-08-162-4-05

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

41._EET_400_[ECU]

91.3 %
40 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

42._EET_400_[ECU] RUQ_760

90 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520